You are hurting your users in two ways:
first they have to wait few second for the page to render and the whole browser freezes because JS engine is unresponsive
but more importantly, you are hurting them because you are displaying a bar chart with almost 1000 horizontal bars!
But will your users appreciate a chart that is 10 screens long? Imagine a web page with thousands of rows in a single table. To the point - think about different data representation: maybe truncate the data after 20 samples and display extra "Others..." bar?
BTW I had a similar problem with jqplot - I was rendering 10+ simple charts on the same page. Just like in your case Firefox was screaming about script running too long. I fixed it by rendering one chart at a time with pauses. The page works like a charm, is much more responsive and pleasant.
I agree with the difficulty of showing this number of data points. This occurs, mostly in FF in other types of chart as well, in my case the column chart.
The difference here, is that there can be reasons for showing a trend over a large dataset, and Highcharts Zoom functionality makes such charts much more usable. The user can spot high spots and anomalies in a larger set, and zoom in to view the individual columns within that region. Also with column charts, the entirety of the presentation is on one page.
That said, the unresponsive script issue remains, and regardless of this type of requirement, it will be necessary to require the user to specify a subset of the data before rendering the chart.
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