Inside API there is no function to switch rows and columns only for exporting table. Change is possible with all data at module data data.switchRowsAndColumns but it's not your case I think.
You can try to change the core and use extending approach how to extending Highcharts
Chart.prototype.getTableAST inside https://code.highcharts.com/modules/export-data.src.js
Old version example showing how to wrap core and change the way to create table at export: https://jsfiddle.net/BlackLabel/npwjxkuL/
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