score:0
nodeclipse does not have any special logic for that, that is eclipse termination. it is said that process is killed. i don't know how exactly that is implemented on different oses. to find out ask on eclipse forum or get eclipse for commiters and try to debug.
score:1
eclipse kills external programs when you click the red button in the console view. more specifically it uses process.destroy() method.
see this bug for some explanation.
even though this method could in theory terminate the process gracefully, in practice this causes sigkill to be sent under unix.
Source: stackoverflow.com
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